Report for Sequence Feature Glyma09g01080
Feature Type: gene_model
Chromosome: Gm09
Start: 625179
stop: 626954
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma09g01080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G04020 AT
Annotation by Michelle Graham. TAIR10: fibrillin | chr4:1932161-1933546 FORWARD LENGTH=318
SoyBase E_val: 6.00E-131 ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0010205 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoinhibition
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009534 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid
SoyBase N/A ISS
GO:0009535 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009579 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: thylakoid
SoyBase N/A ISS
GO:0010287 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule
SoyBase N/A ISS
GO:0010319 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: stromule
SoyBase N/A ISS
GO:0031977 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen
SoyBase N/A ISS
GO:0005198 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural molecule activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PF04755 PFAM
PAP fibrillin
JGI ISS
UniRef100_B9SEJ1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Plastid-lipid-associated protein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SEJ1_RICCO
SoyBase E_val: 4.00E-153 ISS
UniRef100_I1KZW8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KZW8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma09g01080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma09g01080
Paralog Evidence Comments
Glyma15g11910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma09g01080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.09g008100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma09g01080
Coding sequences of Glyma09g01080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma09g01080.1 sequence type=CDS gene model=Glyma09g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTCTCTCTCTCACCTCAACAAACTCCTCTGCATGCCGCCGCTCAACTCTTCACCCTCTACTTCGCCACCGCGCAGCAGCGTCGGAGTTTCGACCAAATCTGTCGGAAGGCCGAGGATGGTCGCCGATTTCGCGAGGCCGGTGGGGCGTGTCCGAGCGGTGACGAGCGACGACGAGTGGGGCCCGGAGAAGGAGGAGGAGGCATACGGCGGAGGAGTGGCGGTGGAGGAGAAACCGACGGAGACGGAAACGGAGAAGCTGAAGAAGGCTTTGGTGGATTCGTTTTATGGCACGGATCTTGGACTGAAAGCAACGAGTGAAACGAGAGCAGAGATCGTTGAACTCATCACTCAGCTAGAGGCCAAGAACCCTAACCCTGCTCCCACTGACGCCTTGACTCTCCTCAACGGAAAATGGATTCTCGCGTATACGTCCTTTGCAGGTTTATTCCCATTGTTGTCAAGTGGAACACTACCATTGGTCAAGGTAGAGGAAATATCTCAGACTATTGACACGCTGAATTTTACCGTCCAAAACTCTGTTCAGTTCGCTGGTCCTTTGGCCACCACCTCAATTAGTACTAATGCCAAATTCGATGTTCGAAGTCCAAAACGTGTGCAGATAAAATTTGAGGAAGGCATAATTGGCACTCCACAGCTTACGGACTCACTAGAGATACCAGAAAATGTGGAACTTCTGGGTCAAAAGATTGACCTTACACCTTTCAAAGGAATCCTTACCTCTGTCCAAGACACAGCCTCATCGGTGGTGAAAACAATTTCAAGTAGGCCTCCCTTGAAGATCCCAATTTCCAACAGCAATGCTCAGTCCTGGTTACTCACTACATACCTTGACGAAGAATTACGTATCTCAAGGGGTGATGGTGGCAGTGTGTTTGTTCTCATCAAAGAGGGAAGCTCTCTTTTGACAAGATAA
Predicted protein sequences of Glyma09g01080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma09g01080.1 sequence type=predicted peptide gene model=Glyma09g01080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASLSHLNKLLCMPPLNSSPSTSPPRSSVGVSTKSVGRPRMVADFARPVGRVRAVTSDDEWGPEKEEEAYGGGVAVEEKPTETETEKLKKALVDSFYGTDLGLKATSETRAEIVELITQLEAKNPNPAPTDALTLLNGKWILAYTSFAGLFPLLSSGTLPLVKVEEISQTIDTLNFTVQNSVQFAGPLATTSISTNAKFDVRSPKRVQIKFEEGIIGTPQLTDSLEIPENVELLGQKIDLTPFKGILTSVQDTASSVVKTISSRPPLKIPISNSNAQSWLLTTYLDEELRISRGDGGSVFVLIKEGSSLLTR*